Variant report

Variant	rs143299324
Chromosome Location	chr15:41581451-41581452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:41579631..41582972-chr15:41599254..41603170,4	K562	blood:
2	chr15:41581131..41583433-chr15:41618949..41620567,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045455	chr15:41536624-41620534	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1044438	chr15:41560160-41745480	Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
3	esv3353891	chr15:41581060-41583108	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41577000-41582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:41577400-41584600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:41577400-41610600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:41577600-41606400	Weak transcription	Stomach Mucosa	stomach
5	chr15:41577800-41581600	Strong transcription	Placenta	Placenta
6	chr15:41577800-41581800	Genic enhancers	Primary T cells fromperipheralblood	blood
7	chr15:41577800-41583600	Weak transcription	Aorta	Aorta
8	chr15:41577800-41583800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:41577800-41589000	Weak transcription	Esophagus	oesophagus
10	chr15:41577800-41591600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr15:41578000-41581600	Strong transcription	Fetal Kidney	kidney
12	chr15:41578000-41581600	Strong transcription	Fetal Lung	lung
13	chr15:41578000-41581600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr15:41578000-41581600	Strong transcription	NH-A	brain
15	chr15:41578000-41582400	Genic enhancers	Liver	Liver
16	chr15:41578000-41584000	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr15:41578000-41584000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:41578000-41584600	Strong transcription	H1 Cell Line	embryonic stem cell
19	chr15:41578000-41584600	Strong transcription	Fetal Intestine Large	intestine
20	chr15:41578000-41588400	Weak transcription	Right Atrium	heart
21	chr15:41578000-41591600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:41578200-41581600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:41578200-41581600	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:41578200-41581800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:41578200-41581800	Strong transcription	NHEK	skin
26	chr15:41578200-41582200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:41578200-41591800	Strong transcription	Fetal Stomach	stomach
28	chr15:41578200-41592600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:41578400-41581600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr15:41578400-41592600	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:41578800-41581600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:41578800-41582400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:41578800-41584400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:41578800-41587800	Strong transcription	Fetal Muscle Leg	muscle
35	chr15:41578800-41591800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:41579000-41581600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:41579000-41581800	Genic enhancers	A549	lung
38	chr15:41579200-41581800	Strong transcription	HSMM	muscle
39	chr15:41579200-41584800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr15:41579200-41584800	Strong transcription	K562	blood
41	chr15:41579200-41593200	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr15:41579200-41612400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr15:41579400-41581600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr15:41579400-41581600	Genic enhancers	Dnd41	blood
45	chr15:41579400-41581800	Strong transcription	Thymus	Thymus
46	chr15:41579800-41581600	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr15:41579800-41581600	Strong transcription	Osteobl	bone
48	chr15:41579800-41581800	Genic enhancers	Left Ventricle	heart
49	chr15:41580000-41581800	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr15:41580000-41581800	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links