Variant report

Variant	rs1433166
Chromosome Location	chr8:108462641-108462642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10086241	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10086336	0.90[JPT][hapmap]
rs10086467	0.89[JPT][hapmap]
rs12541987	0.90[JPT][hapmap]
rs12546710	0.90[JPT][hapmap]
rs13439018	0.90[JPT][hapmap]
rs13439823	0.90[JPT][hapmap]
rs1433165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433172	0.84[JPT][hapmap]
rs1433185	0.90[JPT][hapmap]
rs1433187	0.90[JPT][hapmap]
rs17301273	0.90[JPT][hapmap]
rs1836031	0.84[JPT][hapmap]
rs3847160	0.90[JPT][hapmap]
rs4100190	0.89[JPT][hapmap]
rs4114169	0.90[JPT][hapmap]
rs4571710	0.90[JPT][hapmap]
rs4734967	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108450400-108469600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:108450400-108469800	Weak transcription	Psoas Muscle	Psoas
3	chr8:108452400-108467200	Weak transcription	Fetal Lung	lung
4	chr8:108452400-108468000	Weak transcription	Aorta	Aorta
5	chr8:108457400-108467200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:108457600-108463800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr8:108457600-108466400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:108459600-108463600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:108459600-108464200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:108460200-108466600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:108460200-108467600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:108461200-108462800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:108461400-108467000	Weak transcription	Osteobl	bone
14	chr8:108462000-108469800	Weak transcription	HUVEC	blood vessel
15	chr8:108462400-108462800	Enhancers	Colon Smooth Muscle	Colon
16	chr8:108462600-108462800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:108462600-108462800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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