Variant report

Variant	rs3847160
Chromosome Location	chr8:108456531-108456532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108453384..108454985-chr8:108455120..108456621,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10086241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10086336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10086467	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091818	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955455	0.93[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap]
rs10955456	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12541987	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12546710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13439018	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13439823	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1433165	0.80[CHD][hapmap];0.90[JPT][hapmap]
rs1433166	0.90[JPT][hapmap]
rs1433167	0.90[JPT][hapmap]
rs1433172	0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.86[ASN][1000 genomes]
rs1433185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1433188	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1433193	0.85[JPT][hapmap]
rs17301273	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17302560	0.86[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs1836031	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28577060	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4100190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4114169	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4571710	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734967	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734973	0.86[ASN][1000 genomes]
rs56163052	0.86[ASN][1000 genomes]
rs6469113	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7816817	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108449000-108456600	Weak transcription	Adipose Nuclei	Adipose
2	chr8:108450400-108457000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:108450400-108469600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:108450400-108469800	Weak transcription	Psoas Muscle	Psoas
5	chr8:108452400-108456600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:108452400-108459400	Weak transcription	Ovary	ovary
7	chr8:108452400-108467200	Weak transcription	Fetal Lung	lung
8	chr8:108452400-108468000	Weak transcription	Aorta	Aorta
9	chr8:108452800-108459800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:108454800-108458000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr8:108455000-108457600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:108455200-108456600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr8:108455200-108456800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:108455200-108458000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr8:108455400-108456600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:108455400-108456800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:108455400-108457400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:108455400-108457800	Enhancers	Osteobl	bone
19	chr8:108455400-108458000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:108455400-108458400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr8:108455800-108456600	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:108456000-108456600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:108456000-108456800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr8:108456000-108456800	Enhancers	HSMMtube	muscle
25	chr8:108456000-108457000	Enhancers	HSMM	muscle
26	chr8:108456000-108457400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:108456000-108457400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:108456000-108457600	Enhancers	NHDF-Ad	bronchial
29	chr8:108456000-108458000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:108456200-108456800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr8:108456200-108457400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:108456200-108457400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr8:108456200-108457600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr8:108456200-108457600	Enhancers	NHLF	lung
35	chr8:108456200-108457800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr8:108456200-108458400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr8:108456400-108456800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:108456400-108456800	Enhancers	Colon Smooth Muscle	Colon
39	chr8:108456400-108457600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr8:108456400-108457600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:108456400-108458000	Enhancers	Cortex derived primary cultured neurospheres	brain

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