Variant report

Variant	rs10955456
Chromosome Location	chr8:108431848-108431849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10086241	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10086336	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10086467	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10091818	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10108418	0.81[EUR][1000 genomes]
rs10955455	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541987	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12546710	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13439018	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13439823	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1433185	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1433187	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1433188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1433193	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17301273	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1836031	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28577060	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3847160	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4100190	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4114169	0.87[ASN][1000 genomes]
rs4571710	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734967	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6469113	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7816817	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108420200-108441400	Weak transcription	Aorta	Aorta
2	chr8:108421800-108433800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:108421800-108448200	Weak transcription	Psoas Muscle	Psoas
4	chr8:108427400-108432600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:108427800-108432800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr8:108427800-108433600	Weak transcription	NHLF	lung
7	chr8:108428000-108433200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:108428000-108433200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:108428000-108433200	Weak transcription	HSMM	muscle
10	chr8:108428000-108433200	Weak transcription	Osteobl	bone
11	chr8:108428400-108434000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr8:108429800-108433400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:108430200-108433600	Weak transcription	Ovary	ovary
14	chr8:108430400-108433400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:108430600-108436000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:108431200-108433600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:108431400-108433800	Weak transcription	Right Atrium	heart
18	chr8:108431600-108432000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:108431600-108434400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:108431600-108434400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:108431800-108432000	Enhancers	H1 Cell Line	embryonic stem cell
22	chr8:108431800-108432000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:108431800-108432800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:108431800-108433200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr8:108431800-108433200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:108431800-108433800	Weak transcription	Fetal Kidney	kidney

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