Variant report

Variant	rs28577060
Chromosome Location	chr8:108450076-108450077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10086241	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10086336	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10086467	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10091818	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10955456	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12541987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12546710	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13439018	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13439823	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1433172	0.85[ASN][1000 genomes]
rs1433185	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433187	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433188	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17301273	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1836031	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3847160	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4100190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4114169	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4571710	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734967	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4734973	0.85[ASN][1000 genomes]
rs56163052	0.85[ASN][1000 genomes]
rs6469113	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816817	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108440600-108452000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:108441800-108455400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:108443000-108451800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:108447200-108455400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:108447600-108451400	Enhancers	Primary hematopoietic stem cells	blood
6	chr8:108447800-108450200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:108448200-108450200	Enhancers	Colon Smooth Muscle	Colon
8	chr8:108448200-108450400	Enhancers	NHDF-Ad	bronchial
9	chr8:108448400-108450400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:108448400-108450400	Enhancers	Fetal Kidney	kidney
11	chr8:108448400-108451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:108448600-108450400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr8:108448600-108450400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:108448800-108450400	Enhancers	Fetal Lung	lung
15	chr8:108448800-108450400	Enhancers	GM12878-XiMat	blood
16	chr8:108448800-108450600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:108448800-108450800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr8:108448800-108456200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr8:108449000-108450400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr8:108449000-108450400	Enhancers	Stomach Smooth Muscle	stomach
21	chr8:108449000-108451600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:108449000-108452000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:108449000-108452000	Weak transcription	Aorta	Aorta
24	chr8:108449000-108452000	Weak transcription	Ovary	ovary
25	chr8:108449000-108456600	Weak transcription	Adipose Nuclei	Adipose
26	chr8:108449400-108450400	Enhancers	Dnd41	blood
27	chr8:108449600-108450400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:108449600-108450400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr8:108449600-108456200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr8:108449800-108450200	Enhancers	NHLF	lung
31	chr8:108449800-108450400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr8:108449800-108450400	Enhancers	H9 Cell Line	embryonic stem cell
33	chr8:108449800-108450400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:108449800-108450400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr8:108449800-108450400	Enhancers	Psoas Muscle	Psoas
36	chr8:108449800-108451400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:108449800-108451400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:108449800-108451400	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:108449800-108451800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr8:108450000-108450400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:108450000-108450400	Enhancers	Osteobl	bone
42	chr8:108450000-108451400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr8:108450000-108451600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:108450000-108451600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:108450000-108451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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