Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10086241	0.85[JPT][hapmap]
rs10086336	0.93[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap]
rs10086467	0.84[JPT][hapmap]
rs10108418	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10955456	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12541987	0.85[JPT][hapmap]
rs12546710	0.85[JPT][hapmap]
rs13439018	0.93[CHD][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs13439823	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs1433172	0.88[CHD][hapmap];0.80[JPT][hapmap]
rs1433185	0.97[CHD][hapmap];0.80[GIH][hapmap];0.85[JPT][hapmap]
rs1433187	0.85[JPT][hapmap]
rs1433188	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1433193	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301273	0.93[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap]
rs1836031	0.88[CHD][hapmap]
rs3847160	0.93[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap]
rs4100190	0.84[JPT][hapmap]
rs4114169	0.93[CHD][hapmap];0.85[JPT][hapmap]
rs4571710	0.93[CHD][hapmap];0.83[GIH][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4734967	0.85[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108396200-108414000	Weak transcription	Osteobl	bone
2	chr8:108399800-108421000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:108402600-108409600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:108406400-108409200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:108406800-108408000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:108406800-108409600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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