Variant report

Variant	rs143399231
Chromosome Location	chr3:21724882-21724883
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv527771	chr3:21716235-21726363	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3461577	chr3:21721448-21727746	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv589901	chr3:21721486-21725619	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv589902	chr3:21721486-21725749	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv589903	chr3:21721486-21725811	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv589904	chr3:21721486-21725926	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv589905	chr3:21722700-21725405	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv589906	chr3:21722700-21725619	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv589907	chr3:21722700-21725749	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv589908	chr3:21722700-21725811	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv589909	chr3:21722700-21725926	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3518739	chr3:21722973-21727021	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3461581	chr3:21723261-21726242	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv5738	chr3:21723576-21726215	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3461578	chr3:21723578-21726068	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3518743	chr3:21723606-21726078	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3518741	chr3:21723624-21726011	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3461580	chr3:21723628-21726045	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3461579	chr3:21723637-21726011	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3518740	chr3:21723647-21725924	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv3518738	chr3:21723691-21725977	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv3461582	chr3:21723705-21725901	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
28	esv3518744	chr3:21723705-21725901	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv12198	chr3:21723726-21725961	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv822030	chr3:21723798-21725676	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	nsv822033	chr3:21723798-21725832	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv589910	chr3:21723978-21725325	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv589911	chr3:21723978-21725405	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv589912	chr3:21723978-21725472	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv589913	chr3:21723978-21725619	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv589914	chr3:21723978-21725749	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv589915	chr3:21723978-21725811	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv589916	chr3:21723978-21725926	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv514140	chr3:21723988-21725746	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv589917	chr3:21724116-21725325	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv589918	chr3:21724116-21725472	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv589919	chr3:21724116-21725619	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv589920	chr3:21724116-21725749	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv589921	chr3:21724116-21725811	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv589922	chr3:21724116-21725926	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv589923	chr3:21724116-21726363	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv589924	chr3:21724167-21725619	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv589925	chr3:21724167-21725811	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
49	nsv589926	chr3:21724294-21725749	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
50	nsv589927	chr3:21724294-21725811	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21715000-21728600	Weak transcription	Psoas Muscle	Psoas
2	chr3:21720400-21727000	Weak transcription	Aorta	Aorta
3	chr3:21720600-21725000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:21721200-21725200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:21721600-21727600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:21722600-21725200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:21723400-21725800	Enhancers	Fetal Stomach	stomach
8	chr3:21723800-21725200	Weak transcription	Fetal Kidney	kidney
9	chr3:21724000-21725600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:21724000-21736000	Weak transcription	NHDF-Ad	bronchial
11	chr3:21724400-21725200	Enhancers	Left Ventricle	heart
12	chr3:21724600-21746400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:21724800-21735800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links