Variant report

Variant	rs143517444
Chromosome Location	chr3:135861964-135861965
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135860291..135862678-chr3:135891863..135894559,2	MCF-7	breast:
2	chr3:135861871..135867047-chr3:135867816..135873226,7	K562	blood:
3	chr3:135860397..135862816-chr3:135864365..135866011,2	MCF-7	breast:
4	chr3:135861871..135864342-chr3:135869780..135872731,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv877518	chr3:135861666-135885554	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135822800-135870000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:135823200-135868400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:135831400-135869400	Weak transcription	Psoas Muscle	Psoas
4	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
5	chr3:135843400-135866400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:135843800-135873800	Weak transcription	Colonic Mucosa	Colon
7	chr3:135845600-135863000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:135845600-135864000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:135845600-135869600	Weak transcription	Fetal Lung	lung
10	chr3:135845600-135880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:135845800-135864000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:135845800-135866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:135846200-135863600	Weak transcription	Brain Germinal Matrix	brain
14	chr3:135846200-135864200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr3:135850800-135866000	Weak transcription	Brain Hippocampus Middle	brain
16	chr3:135852400-135868000	Weak transcription	Fetal Brain Female	brain
17	chr3:135854200-135863600	Weak transcription	Fetal Intestine Large	intestine
18	chr3:135854200-135870000	Weak transcription	Spleen	Spleen
19	chr3:135854600-135863600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr3:135854600-135868400	Weak transcription	Thymus	Thymus
21	chr3:135854600-135870000	Weak transcription	Fetal Intestine Small	intestine
22	chr3:135855800-135865200	Weak transcription	Fetal Thymus	thymus
23	chr3:135855800-135866000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr3:135855800-135868000	Weak transcription	K562	blood
25	chr3:135855800-135870800	Weak transcription	Fetal Kidney	kidney
26	chr3:135856400-135866000	Weak transcription	Lung	lung
27	chr3:135857400-135863600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:135857400-135866600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr3:135857600-135862600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr3:135858000-135866200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr3:135858200-135864400	Weak transcription	Dnd41	blood
32	chr3:135858200-135869200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:135858400-135864000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:135859200-135868000	Weak transcription	Primary B cells from cord blood	blood
35	chr3:135859600-135862200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:135859600-135863200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:135859600-135863200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr3:135859600-135864000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr3:135859800-135862000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:135859800-135862000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:135859800-135862000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr3:135859800-135862200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:135859800-135862400	Enhancers	HSMM	muscle
44	chr3:135859800-135862600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr3:135860000-135862000	Enhancers	Fetal Heart	heart
46	chr3:135860000-135862000	Enhancers	NHLF	lung
47	chr3:135860000-135862200	Enhancers	NH-A	brain
48	chr3:135860000-135862200	Enhancers	Osteobl	bone
49	chr3:135860200-135862000	Enhancers	Muscle Satellite Cultured Cells	--
50	chr3:135860400-135862200	Enhancers	Pancreatic Islets	Pancreatic Islet

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