Variant report

Variant	rs1435521
Chromosome Location	chr4:74807928-74807929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74806189..74808887-chr4:74899171..74901501,2	K562	blood:
2	chr4:74801511..74803717-chr4:74807849..74809855,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10007249	0.80[ASN][1000 genomes]
rs10017182	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs10033521	0.91[EUR][1000 genomes]
rs10938105	0.91[EUR][1000 genomes]
rs11939236	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12498174	0.90[EUR][1000 genomes]
rs13112134	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13120504	0.89[EUR][1000 genomes]
rs13122604	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13128887	0.91[EUR][1000 genomes]
rs13136948	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1435520	0.81[JPT][hapmap]
rs149611	0.84[ASN][1000 genomes]
rs1595008	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1595009	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2082822	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082823	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2115695	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2175498	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2367443	0.91[EUR][1000 genomes]
rs2472649	0.83[CEU][hapmap]
rs3114083	0.82[EUR][1000 genomes]
rs352036	0.84[ASN][1000 genomes]
rs353028	0.83[ASN][1000 genomes]
rs353029	0.83[ASN][1000 genomes]
rs353031	0.83[ASN][1000 genomes]
rs353032	0.80[ASN][1000 genomes]
rs353042	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs3906613	0.91[EUR][1000 genomes]
rs4399951	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4694180	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4694654	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4694655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4694657	0.91[EUR][1000 genomes]
rs4694658	0.91[EUR][1000 genomes]
rs4694659	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4694660	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4694661	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs57274239	0.80[ASN][1000 genomes]
rs6446970	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6446973	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6810940	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs6813021	0.88[EUR][1000 genomes]
rs6819077	0.91[EUR][1000 genomes]
rs6819566	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822890	0.91[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6832583	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7662553	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7666671	0.83[ASN][1000 genomes]
rs7671525	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8180167	0.91[EUR][1000 genomes]
rs9291189	0.91[EUR][1000 genomes]
rs938094	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv1006029	chr4:74793922-74986664	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv1010272	chr4:74802868-74813081	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74803800-74809000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:74807800-74808000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links