Variant report

Variant	rs352036
Chromosome Location	chr4:74782538-74782539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:74780772..74782815-chr4:74785831..74788410,2	K562	blood:
2	chr4:74779846..74782803-chr4:74788960..74790766,2	K562	blood:
3	chr4:74780043..74783645-chr4:74784041..74787591,3	K562	blood:
4	chr4:74766463..74768421-chr4:74779822..74782631,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10007249	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10518117	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11508014	0.83[EUR][1000 genomes]
rs11574452	1.00[CEU][hapmap]
rs12108606	0.93[EUR][1000 genomes]
rs13112134	0.86[ASN][1000 genomes]
rs13122604	0.86[ASN][1000 genomes]
rs13136948	0.93[CHB][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs1429637	0.89[EUR][1000 genomes]
rs1435520	1.00[CEU][hapmap]
rs1435521	0.93[CHB][hapmap];0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs149611	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1511815	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs16845091	0.89[EUR][1000 genomes]
rs16850160	0.89[EUR][1000 genomes]
rs16850178	0.89[EUR][1000 genomes]
rs16850360	0.85[CEU][hapmap]
rs1951233	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1957069	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2082822	0.86[ASN][1000 genomes]
rs2082823	0.86[ASN][1000 genomes]
rs2115695	0.85[ASN][1000 genomes]
rs2145614	0.85[CEU][hapmap]
rs2180883	0.85[CEU][hapmap]
rs2195543	0.89[EUR][1000 genomes]
rs2367427	0.89[EUR][1000 genomes]
rs3111693	0.85[CEU][hapmap]
rs3117602	0.85[CEU][hapmap]
rs353028	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs353029	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs353031	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs353032	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs353034	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs353039	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs353040	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs353042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3756074	1.00[CEU][hapmap]
rs4082827	0.89[EUR][1000 genomes]
rs4694654	0.85[ASN][1000 genomes]
rs4694655	0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs499141	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs529312	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57274239	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58324794	0.86[EUR][1000 genomes]
rs58463118	0.89[EUR][1000 genomes]
rs585778	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58610473	0.86[EUR][1000 genomes]
rs60775930	0.89[EUR][1000 genomes]
rs61412577	0.89[EUR][1000 genomes]
rs629315	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6446970	0.85[ASN][1000 genomes]
rs671253	0.89[EUR][1000 genomes]
rs6813952	0.87[CEU][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs6819566	0.86[ASN][1000 genomes]
rs6832583	0.86[ASN][1000 genomes]
rs7656335	0.89[EUR][1000 genomes]
rs7666671	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7671525	0.86[ASN][1000 genomes]
rs938094	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv1004768	chr4:74774372-75109579	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv1006218	chr4:74782324-75105424	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74781000-74784400	Enhancers	HMEC	breast
2	chr4:74781400-74784200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:74781400-74786000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:74781600-74784200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:74781600-74784200	Enhancers	NH-A	brain
6	chr4:74781600-74784200	Enhancers	NHEK	skin
7	chr4:74781600-74784600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:74781600-74784800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:74782200-74782600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:74782200-74783600	Enhancers	NHDF-Ad	bronchial
11	chr4:74782200-74784000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:74782200-74784000	Enhancers	Hela-S3	cervix
13	chr4:74782200-74784200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:74782200-74784200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:74782200-74784200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:74782200-74784400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:74782200-74784400	Enhancers	Osteobl	bone
18	chr4:74782200-74784600	Enhancers	NHLF	lung
19	chr4:74782400-74784000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:74782400-74784000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr4:74782400-74784200	Enhancers	HSMMtube	muscle
22	chr4:74782400-74786000	Enhancers	HSMM	muscle

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