Variant report

Variant	rs7656335
Chromosome Location	chr4:74735524-74735525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10007249	0.86[EUR][1000 genomes]
rs10518117	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12108606	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs149611	0.89[EUR][1000 genomes]
rs1511815	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16845091	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16850160	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16850178	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1951233	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1957069	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2367427	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs352036	0.89[EUR][1000 genomes]
rs353028	0.89[EUR][1000 genomes]
rs353029	0.83[EUR][1000 genomes]
rs353031	0.86[EUR][1000 genomes]
rs353034	0.86[EUR][1000 genomes]
rs353039	0.86[EUR][1000 genomes]
rs353040	0.86[EUR][1000 genomes]
rs499141	0.86[EUR][1000 genomes]
rs529312	0.86[EUR][1000 genomes]
rs57274239	0.89[EUR][1000 genomes]
rs58324794	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58463118	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs585778	0.86[EUR][1000 genomes]
rs58610473	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60775930	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61412577	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs629315	0.86[EUR][1000 genomes]
rs671253	0.93[EUR][1000 genomes]
rs7666671	0.86[EUR][1000 genomes]
rs938094	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74733600-74738800	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr4:74733800-74736400	Active TSS	Rectal Smooth Muscle	rectum
3	chr4:74734000-74735800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
4	chr4:74734000-74735800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:74734000-74736400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:74734200-74735600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:74734200-74737000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:74734400-74735600	Flanking Active TSS	Liver	Liver
9	chr4:74734400-74735600	Active TSS	Colon Smooth Muscle	Colon
10	chr4:74734400-74735600	Bivalent Enhancer	Fetal Brain Male	brain
11	chr4:74734400-74735600	Active TSS	Placenta Amnion	Placenta Amnion
12	chr4:74734400-74735600	Active TSS	Stomach Mucosa	stomach
13	chr4:74734400-74735800	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr4:74734400-74735800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
15	chr4:74734400-74735800	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr4:74734400-74736200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:74734400-74736200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
18	chr4:74734400-74736200	Active TSS	Fetal Intestine Large	intestine
19	chr4:74734400-74736200	Active TSS	Right Atrium	heart
20	chr4:74734400-74736200	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
21	chr4:74734400-74736200	Active TSS	A549	lung
22	chr4:74734400-74736400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:74734400-74736800	Active TSS	Pancreas	Pancrea
24	chr4:74734600-74735600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:74734600-74735600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:74734600-74735600	Active TSS	H9 Cell Line	embryonic stem cell
27	chr4:74734600-74735600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr4:74734600-74735600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr4:74734600-74735600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr4:74734600-74735600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:74734600-74735600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr4:74734600-74735600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
33	chr4:74734600-74735600	Bivalent Enhancer	Fetal Heart	heart
34	chr4:74734600-74735600	Active TSS	Fetal Intestine Small	intestine
35	chr4:74734600-74735600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
36	chr4:74734600-74735600	Active TSS	HSMM	muscle
37	chr4:74734600-74735800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:74734600-74735800	Active TSS	Primary T cells from cord blood	blood
39	chr4:74734600-74735800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:74734600-74735800	Active TSS	Brain Anterior Caudate	brain
41	chr4:74734600-74735800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
42	chr4:74734600-74735800	Active TSS	Left Ventricle	heart
43	chr4:74734600-74736000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
44	chr4:74734600-74736000	Active TSS	Primary B cells from cord blood	blood
45	chr4:74734600-74736200	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
46	chr4:74734600-74736200	Active TSS	Esophagus	oesophagus
47	chr4:74734800-74735600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr4:74734800-74735600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:74734800-74735600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
50	chr4:74734800-74735600	Active TSS	Lung	lung

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