Variant report

Variant	rs16845091
Chromosome Location	chr4:74758801-74758802
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74758611..74762453-chr4:74763527..74766152,5	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10007249	0.93[EUR][1000 genomes]
rs10518117	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11508014	0.80[EUR][1000 genomes]
rs11574452	1.00[CEU][hapmap]
rs12108606	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429637	0.86[EUR][1000 genomes]
rs1435520	1.00[CEU][hapmap]
rs149611	0.89[EUR][1000 genomes]
rs1511815	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16850160	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850178	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850360	0.85[CEU][hapmap]
rs1951233	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957069	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2145614	0.85[CEU][hapmap]
rs2180883	0.85[CEU][hapmap];0.92[GIH][hapmap]
rs2195543	0.86[EUR][1000 genomes]
rs2367427	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3111693	0.85[CEU][hapmap];0.92[GIH][hapmap]
rs3117602	0.85[CEU][hapmap]
rs352036	0.89[EUR][1000 genomes]
rs353028	0.89[EUR][1000 genomes]
rs353029	0.89[EUR][1000 genomes]
rs353031	0.93[EUR][1000 genomes]
rs353032	0.83[EUR][1000 genomes]
rs353034	0.93[EUR][1000 genomes]
rs353039	0.93[EUR][1000 genomes]
rs353040	0.93[EUR][1000 genomes]
rs353042	1.00[CEU][hapmap]
rs3756074	1.00[CEU][hapmap]
rs4082827	0.86[EUR][1000 genomes]
rs499141	0.93[EUR][1000 genomes]
rs529312	0.93[EUR][1000 genomes]
rs57274239	0.89[EUR][1000 genomes]
rs58324794	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58463118	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585778	0.93[EUR][1000 genomes]
rs58610473	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60775930	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61412577	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs629315	0.93[EUR][1000 genomes]
rs671253	1.00[EUR][1000 genomes]
rs6813952	0.87[CEU][hapmap]
rs7656335	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7666671	0.93[EUR][1000 genomes]
rs938094	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74752000-74760600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:74756800-74759200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:74757000-74759000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:74757000-74759000	Enhancers	Fetal Intestine Small	intestine
5	chr4:74757000-74760000	Enhancers	Fetal Intestine Large	intestine
6	chr4:74757200-74760000	Weak transcription	Fetal Kidney	kidney
7	chr4:74757200-74770400	Enhancers	NHDF-Ad	bronchial
8	chr4:74757400-74761000	Weak transcription	Stomach Mucosa	stomach
9	chr4:74757600-74760200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:74757600-74760600	Weak transcription	Pancreas	Pancrea
11	chr4:74757600-74761200	Weak transcription	Spleen	Spleen
12	chr4:74757800-74759800	Weak transcription	Fetal Stomach	stomach
13	chr4:74758000-74759600	Enhancers	A549	lung
14	chr4:74758200-74760200	Weak transcription	Adipose Nuclei	Adipose
15	chr4:74758200-74760800	Weak transcription	Osteobl	bone
16	chr4:74758600-74760000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:74758600-74760000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:74758800-74759800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:74758800-74761200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links