Variant report

Variant	rs60775930
Chromosome Location	chr4:74765926-74765927
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:74758611..74762453-chr4:74763527..74766152,5	K562	blood:
2	chr4:74764548..74766659-chr4:74904527..74906987,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10007249	0.93[EUR][1000 genomes]
rs10518117	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11508014	0.80[EUR][1000 genomes]
rs12108606	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1429637	0.86[EUR][1000 genomes]
rs149611	0.89[EUR][1000 genomes]
rs1511815	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16845091	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850160	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16850178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951233	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1957069	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2195543	0.86[EUR][1000 genomes]
rs2367427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367429	0.82[AMR][1000 genomes]
rs2367430	0.82[AMR][1000 genomes]
rs352036	0.89[EUR][1000 genomes]
rs353028	0.89[EUR][1000 genomes]
rs353029	0.89[EUR][1000 genomes]
rs353031	0.93[EUR][1000 genomes]
rs353032	0.83[EUR][1000 genomes]
rs353034	0.93[EUR][1000 genomes]
rs353039	0.93[EUR][1000 genomes]
rs353040	0.93[EUR][1000 genomes]
rs4082827	0.86[EUR][1000 genomes]
rs499141	0.93[EUR][1000 genomes]
rs529312	0.93[EUR][1000 genomes]
rs57274239	0.89[EUR][1000 genomes]
rs58324794	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58463118	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585778	0.93[EUR][1000 genomes]
rs58610473	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61412577	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs629315	0.93[EUR][1000 genomes]
rs671253	1.00[EUR][1000 genomes]
rs7656335	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7666671	0.93[EUR][1000 genomes]
rs938094	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74757200-74770400	Enhancers	NHDF-Ad	bronchial
2	chr4:74759800-74770400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:74760200-74767000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:74761200-74766600	Weak transcription	K562	blood
5	chr4:74761200-74767400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:74761200-74768600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:74761800-74766800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:74763200-74767600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:74763800-74766400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:74763800-74766600	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:74763800-74767200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:74764200-74766800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:74764600-74766600	Weak transcription	NHLF	lung
14	chr4:74765800-74766000	Enhancers	Osteobl	bone
15	chr4:74765800-74768400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links