Variant report
| Variant | rs1437344 |
|---|---|
| Chromosome Location | chr2:142441204-142441205 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:142435826..142437412-chr2:142439074..142441235,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs10190730 | 0.82[CEU][hapmap] |
| rs13023628 | 1.00[ASW][hapmap] |
| rs17734594 | 1.00[CEU][hapmap] |
| rs1842932 | 1.00[CEU][hapmap] |
| rs2890614 | 0.82[CEU][hapmap] |
| rs355596 | 0.82[CEU][hapmap];0.81[TSI][hapmap] |
| rs4954921 | 1.00[ASW][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583214 | chr2:142299923-142458316 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv834394 | chr2:142430225-142593264 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
