Variant report

Variant	rs4954921
Chromosome Location	chr2:142424077-142424078
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10190730	0.85[CEU][hapmap];0.88[CHB][hapmap];0.85[TSI][hapmap]
rs10496890	1.00[TSI][hapmap]
rs10928117	0.95[ASN][1000 genomes]
rs12464970	0.87[ASN][1000 genomes]
rs12992419	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs12993814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12995584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs13008705	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13018092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13023628	1.00[ASW][hapmap]
rs1370329	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1437344	1.00[ASW][hapmap]
rs17736712	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17744874	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs17800425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1898426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2890601	0.86[CHB][hapmap]
rs33958425	0.84[EUR][1000 genomes]
rs35277594	0.88[EUR][1000 genomes]
rs355561	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs355563	0.83[GIH][hapmap];1.00[JPT][hapmap]
rs355565	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs355587	0.86[CHB][hapmap]
rs355596	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs355600	1.00[TSI][hapmap]
rs35919147	0.88[EUR][1000 genomes]
rs6727219	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71348769	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7573013	0.84[ASN][1000 genomes]
rs9677566	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142418600-142428400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:142424000-142424400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr2:142424000-142425000	Enhancers	HUES48 Cell Line	embryonic stem cell

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