Variant report

Variant	rs9677566
Chromosome Location	chr2:142471029-142471030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10928117	0.84[EUR][1000 genomes]
rs12464970	0.82[EUR][1000 genomes]
rs13016120	0.85[JPT][hapmap]
rs1370328	0.80[ASW][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap]
rs1370329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16846952	0.84[YRI][hapmap]
rs16846976	0.84[YRI][hapmap]
rs17736712	0.85[CEU][hapmap];0.80[GIH][hapmap];0.96[TSI][hapmap]
rs17744874	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs2890601	0.93[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs35277594	0.94[ASN][1000 genomes]
rs355563	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap]
rs35919147	0.94[ASN][1000 genomes]
rs4954921	0.82[GIH][hapmap]
rs6706028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7573013	0.82[EUR][1000 genomes]
rs978602	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv433206	chr2:142469781-142486875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142469600-142471400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:142469600-142471600	Weak transcription	Adipose Nuclei	Adipose
3	chr2:142469600-142472000	Weak transcription	Liver	Liver
4	chr2:142469800-142472400	Weak transcription	Fetal Lung	lung
5	chr2:142471000-142472000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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