Variant report

Variant	rs6706028
Chromosome Location	chr2:142454212-142454213
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10928117	0.87[EUR][1000 genomes]
rs12464970	0.86[EUR][1000 genomes]
rs13016120	0.85[JPT][hapmap]
rs1347658	0.81[EUR][1000 genomes]
rs1370329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17736712	0.85[CEU][hapmap]
rs17744874	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs2890601	0.93[CEU][hapmap]
rs35277594	0.98[ASN][1000 genomes]
rs355563	1.00[CEU][hapmap]
rs35919147	0.98[ASN][1000 genomes]
rs7573013	0.86[EUR][1000 genomes]
rs9677566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142453000-142458600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:142453200-142455600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:142453400-142455200	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links