Variant report

Variant	rs1370329
Chromosome Location	chr2:142468384-142468385
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10190730	0.85[CEU][hapmap]
rs12992419	0.82[CEU][hapmap]
rs12993814	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12995584	1.00[CEU][hapmap]
rs13008705	1.00[CEU][hapmap]
rs13016120	0.85[JPT][hapmap]
rs13018092	0.88[EUR][1000 genomes]
rs17800425	1.00[CEU][hapmap]
rs35277594	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs355561	1.00[CEU][hapmap]
rs355565	1.00[CEU][hapmap]
rs355596	0.85[CEU][hapmap]
rs35919147	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4954921	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6706028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6727219	0.85[EUR][1000 genomes]
rs71348769	0.84[EUR][1000 genomes]
rs9677566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142462400-142469400	Weak transcription	Fetal Lung	lung
2	chr2:142467400-142469600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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