Variant report

Variant	rs35919147
Chromosome Location	chr2:142461216-142461217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12993814	0.88[EUR][1000 genomes]
rs13018092	0.88[EUR][1000 genomes]
rs1370329	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35277594	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4954921	0.88[EUR][1000 genomes]
rs6706028	0.98[ASN][1000 genomes]
rs6727219	0.85[EUR][1000 genomes]
rs71348769	0.84[EUR][1000 genomes]
rs9677566	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142456800-142462800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:142458200-142461400	Enhancers	Fetal Stomach	stomach
3	chr2:142460000-142463600	Weak transcription	Liver	Liver
4	chr2:142460400-142461400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:142460400-142461400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:142461200-142462200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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