Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142398871..142401024-chr2:142404435..142406777,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10190730	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs10928117	0.91[ASN][1000 genomes]
rs12464970	1.00[ASN][1000 genomes]
rs12992419	0.82[CEU][hapmap]
rs12993814	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12995584	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13018092	1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1347658	0.90[ASN][1000 genomes]
rs1370329	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs17736712	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs17744874	0.80[ASN][1000 genomes]
rs17800425	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs1898426	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2890601	1.00[CHB][hapmap]
rs33958425	0.86[EUR][1000 genomes]
rs35277594	0.86[EUR][1000 genomes]
rs355561	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs355563	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs355565	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs355596	0.85[CEU][hapmap]
rs35919147	0.86[EUR][1000 genomes]
rs4954921	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6727219	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71348769	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7573013	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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