Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142398871..142401024-chr2:142404435..142406777,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10190730	0.86[CHB][hapmap]
rs10928117	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12464970	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993814	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs12995584	0.85[CHB][hapmap]
rs13008705	1.00[CHB][hapmap]
rs13018092	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1347658	0.98[AFR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1370328	0.83[TSI][hapmap]
rs1437352	0.91[YRI][hapmap]
rs17736712	0.86[CHB][hapmap];0.96[TSI][hapmap]
rs17744874	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs17800425	0.86[CHB][hapmap]
rs1898426	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs2028129	0.91[YRI][hapmap]
rs355561	0.86[CHB][hapmap]
rs355563	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs355565	0.86[CHB][hapmap]
rs355587	0.85[CEU][hapmap]
rs453314	0.91[YRI][hapmap]
rs4954921	0.86[CHB][hapmap];0.87[ASN][1000 genomes]
rs6706028	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs6727219	0.87[ASN][1000 genomes]
rs6747694	0.91[YRI][hapmap]
rs71348769	0.91[ASN][1000 genomes]
rs7573013	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9677566	0.93[CEU][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap]
rs978602	0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv583234	chr2:142376540-142404955	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: