Variant report

Variant	rs16846976
Chromosome Location	chr2:142484233-142484234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13391850	1.00[MEX][hapmap]
rs16846952	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16846973	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6744109	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73963538	0.84[AFR][1000 genomes]
rs73963539	0.84[AFR][1000 genomes]
rs73963545	0.83[AMR][1000 genomes]
rs73963548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7570091	0.84[YRI][hapmap]
rs9677566	0.84[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv433206	chr2:142469781-142486875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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