Variant report

Variant	rs7570091
Chromosome Location	chr2:142471700-142471701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10496889	0.82[CEU][hapmap]
rs11898305	0.82[JPT][hapmap]
rs1370328	0.80[ASW][hapmap]
rs16846952	0.84[YRI][hapmap]
rs16846976	0.84[YRI][hapmap]
rs17738291	0.82[JPT][hapmap]
rs17801458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6708984	0.82[JPT][hapmap]
rs73963540	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs978601	0.82[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv433206	chr2:142469781-142486875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142469600-142472000	Weak transcription	Liver	Liver
2	chr2:142469800-142472400	Weak transcription	Fetal Lung	lung
3	chr2:142471000-142472000	Enhancers	Colon Smooth Muscle	Colon
4	chr2:142471400-142472000	Enhancers	Fetal Brain Female	brain
5	chr2:142471400-142472400	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:142471400-142472600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:142471400-142472600	Enhancers	Dnd41	blood
8	chr2:142471400-142472800	Enhancers	Fetal Brain Male	brain
9	chr2:142471600-142472000	Enhancers	Fetal Kidney	kidney
10	chr2:142471600-142473000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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