Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10209842	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10496881	0.82[JPT][hapmap]
rs11887304	0.82[JPT][hapmap]
rs1191704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13393506	0.93[YRI][hapmap]
rs16846216	0.82[JPT][hapmap]
rs16846251	0.82[JPT][hapmap]
rs16846274	0.82[JPT][hapmap]
rs16846416	0.82[JPT][hapmap]
rs16846509	0.82[JPT][hapmap]
rs16846539	0.82[JPT][hapmap]
rs16846835	0.93[YRI][hapmap]
rs16855055	0.82[JPT][hapmap]
rs17738291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17801458	0.82[JPT][hapmap]
rs355534	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs355535	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs355540	1.00[ASW][hapmap];0.94[LWK][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes]
rs355542	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs355546	1.00[ASW][hapmap];0.94[LWK][hapmap];0.86[YRI][hapmap]
rs355597	0.92[CEU][hapmap]
rs41396347	0.82[JPT][hapmap]
rs4491668	0.82[JPT][hapmap]
rs4547471	0.82[JPT][hapmap]
rs6708984	1.00[JPT][hapmap]
rs7570091	0.82[JPT][hapmap]
rs9287319	0.82[JPT][hapmap]
rs978601	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
2	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142418600-142428400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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