Variant report

Variant	rs16846416
Chromosome Location	chr2:142290687-142290688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10496881	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs10496889	0.82[CEU][hapmap]
rs11887304	1.00[JPT][hapmap]
rs11898305	0.82[JPT][hapmap]
rs1483144	0.85[JPT][hapmap]
rs16846216	1.00[JPT][hapmap]
rs16846224	1.00[JPT][hapmap]
rs16846251	1.00[JPT][hapmap]
rs16846274	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs16846509	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16846539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16846586	0.85[CEU][hapmap]
rs16855055	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs16855061	1.00[CEU][hapmap]
rs16855062	0.82[CEU][hapmap]
rs16855067	0.85[CEU][hapmap]
rs17738291	0.82[JPT][hapmap]
rs1905291	0.85[JPT][hapmap];0.88[MEX][hapmap]
rs41396347	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs4271711	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4491668	1.00[JPT][hapmap]
rs4547471	1.00[JPT][hapmap]
rs4560051	0.85[JPT][hapmap];0.88[MEX][hapmap]
rs4575660	0.85[JPT][hapmap]
rs4954914	0.85[JPT][hapmap]
rs62167901	0.88[ASN][1000 genomes]
rs62167934	0.94[ASN][1000 genomes]
rs62167935	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6429898	0.84[JPT][hapmap]
rs6708984	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs6717169	0.85[JPT][hapmap]
rs6749551	0.85[JPT][hapmap]
rs72851386	0.88[ASN][1000 genomes]
rs72852436	0.88[ASN][1000 genomes]
rs72852464	0.88[ASN][1000 genomes]
rs72853562	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853582	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72853591	0.94[ASN][1000 genomes]
rs72853599	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72855461	0.88[ASN][1000 genomes]
rs7576810	0.94[ASN][1000 genomes]
rs7597485	0.85[CEU][hapmap]
rs9287319	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs978601	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875240	chr2:142199421-142347455	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv470491	chr2:142254119-142299923	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	nsv583210	chr2:142259592-142295042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv459629	chr2:142263400-142295042	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv583211	chr2:142263400-142295042	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv583212	chr2:142263979-142309330	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142278800-142291200	Weak transcription	Brain Anterior Caudate	brain
2	chr2:142280600-142291600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:142284600-142291600	Weak transcription	Brain Substantia Nigra	brain
4	chr2:142287400-142291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:142287400-142291200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr2:142287600-142291600	Weak transcription	GM12878-XiMat	blood

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