Variant report

Variant	rs72855461
Chromosome Location	chr2:142352902-142352903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16846416	0.88[ASN][1000 genomes]
rs16846509	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16846564	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16855061	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62166491	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs62167934	0.83[ASN][1000 genomes]
rs62167935	0.83[ASN][1000 genomes]
rs72853562	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72853582	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72853591	0.94[ASN][1000 genomes]
rs72853599	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72855477	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72855499	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72855500	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7576810	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583233	chr2:142336104-142359850	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142352200-142353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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