Variant report

Variant	rs6708984
Chromosome Location	chr2:142354454-142354455
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:142348226..142350841-chr2:142353391..142355433,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10496881	0.82[JPT][hapmap]
rs11887304	0.85[JPT][hapmap]
rs11898305	1.00[JPT][hapmap]
rs16846216	0.85[JPT][hapmap]
rs16846224	0.82[JPT][hapmap]
rs16846251	0.85[JPT][hapmap]
rs16846274	0.82[JPT][hapmap]
rs16846416	0.82[CEU][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs16846509	0.82[CEU][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs16846539	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs16846564	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16855055	0.85[JPT][hapmap]
rs16855061	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs17738291	0.85[JPT][hapmap]
rs17801458	0.82[JPT][hapmap]
rs41396347	0.82[JPT][hapmap]
rs4491668	0.85[JPT][hapmap]
rs4547471	0.85[JPT][hapmap]
rs62167934	0.83[ASN][1000 genomes]
rs62167935	0.83[ASN][1000 genomes]
rs72853562	0.88[ASN][1000 genomes]
rs72853582	0.88[ASN][1000 genomes]
rs72853591	0.94[ASN][1000 genomes]
rs72853599	0.94[ASN][1000 genomes]
rs72855461	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72855477	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72855499	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72855500	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7570091	0.82[JPT][hapmap]
rs7576810	0.83[ASN][1000 genomes]
rs9287319	0.82[JPT][hapmap]
rs978601	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583233	chr2:142336104-142359850	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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