Variant report

Variant	rs143753884
Chromosome Location	chr6:74303216-74303217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:74293523..74296291-chr6:74302711..74304704,2	K562	blood:
2	chr6:74275602..74279787-chr6:74300038..74304050,3	MCF-7	breast:
3	chr6:74229493..74232115-chr6:74302546..74306008,3	K562	blood:
4	chr6:74231646..74233694-chr6:74302777..74306194,3	MCF-7	breast:
5	chr6:74228936..74230548-chr6:74302607..74304232,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229862	Chromatin interaction
ENSG00000156508	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv886158	chr6:74126084-74436825	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
3	nsv1027968	chr6:74155378-74521923	Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	nsv538305	chr6:74155378-74521923	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv1017716	chr6:74173173-74401162	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
6	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
7	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
8	nsv527357	chr6:74253266-74325403	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv603694	chr6:74275405-74365807	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv1029927	chr6:74300496-74424355	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv1027691	chr6:74302980-74417450	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74289400-74304000	Weak transcription	Right Ventricle	heart
2	chr6:74289600-74309600	Weak transcription	Lung	lung
3	chr6:74289600-74323800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:74290600-74305800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:74290600-74318400	Weak transcription	Small Intestine	intestine
6	chr6:74290600-74338800	Weak transcription	Ovary	ovary
7	chr6:74291000-74307200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:74291000-74315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:74291000-74323600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:74295200-74321800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:74296000-74317200	Weak transcription	Fetal Brain Female	brain
12	chr6:74296200-74317800	Weak transcription	Colonic Mucosa	Colon
13	chr6:74296200-74317800	Weak transcription	Gastric	stomach
14	chr6:74296200-74322200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:74296200-74322400	Weak transcription	Brain Germinal Matrix	brain
16	chr6:74296200-74332000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:74296400-74307200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:74296400-74307200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:74296400-74307400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:74296400-74309000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:74296400-74309000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr6:74296400-74316000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr6:74296400-74316400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:74296400-74318400	Weak transcription	Aorta	Aorta
25	chr6:74296400-74318400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:74296400-74325800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:74296400-74354800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:74296400-74354800	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr6:74296400-74355000	Weak transcription	Fetal Brain Male	brain
30	chr6:74296600-74303600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:74296600-74304200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:74296600-74304200	Weak transcription	NHLF	lung
33	chr6:74296600-74307400	Weak transcription	Brain Angular Gyrus	brain
34	chr6:74296600-74307400	Weak transcription	Brain Anterior Caudate	brain
35	chr6:74296600-74308000	Weak transcription	NHEK	skin
36	chr6:74296600-74309000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:74296600-74317600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr6:74296600-74317800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:74296600-74319200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr6:74296600-74324000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr6:74296600-74324200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr6:74296600-74324400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:74296600-74344000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:74296800-74304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr6:74296800-74304200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr6:74296800-74307400	Weak transcription	Brain Hippocampus Middle	brain
47	chr6:74296800-74309200	Weak transcription	NH-A	brain
48	chr6:74296800-74316200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:74296800-74334000	Weak transcription	Fetal Lung	lung
50	chr6:74297000-74304000	Weak transcription	HepG2	liver

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