Variant report

Variant	rs1441369
Chromosome Location	chr5:112019200-112019201
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:112018949..112022294-chr5:112089786..112092475,3	MCF-7	breast:
2	chr5:112017960..112020508-chr5:112020777..112023084,3	K562	blood:
3	chr5:112003283..112005720-chr5:112018708..112021018,2	MCF-7	breast:
4	chr5:112015114..112017797-chr5:112018212..112021156,3	K562	blood:
5	chr5:112018915..112020508-chr5:112020831..112023084,2	K562	blood:
6	chr5:112018990..112022293-chr5:112024063..112027716,5	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11241181	1.00[AMR][1000 genomes]
rs11750684	1.00[AMR][1000 genomes]
rs13361581	1.00[AMR][1000 genomes]
rs13436450	1.00[AMR][1000 genomes]
rs1441368	1.00[AMR][1000 genomes]
rs2464806	1.00[AMR][1000 genomes]
rs2464812	1.00[AMR][1000 genomes]
rs369952	1.00[AMR][1000 genomes]
rs380589	1.00[AMR][1000 genomes]
rs392179	1.00[AMR][1000 genomes]
rs415045	1.00[AMR][1000 genomes]
rs464338	1.00[AMR][1000 genomes]
rs468293	1.00[AMR][1000 genomes]
rs469336	1.00[AMR][1000 genomes]
rs4705617	1.00[AMR][1000 genomes]
rs4705753	1.00[AMR][1000 genomes]
rs7718899	1.00[AMR][1000 genomes]
rs9326864	1.00[AMR][1000 genomes]
rs9986303	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599368	chr5:111399885-112032675	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830450	chr5:111964170-112134510	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112014400-112020200	Weak transcription	Colon Smooth Muscle	Colon
2	chr5:112016400-112022600	Enhancers	NHDF-Ad	bronchial
3	chr5:112017400-112019600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:112017400-112020200	Weak transcription	Psoas Muscle	Psoas
5	chr5:112017600-112019600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:112017600-112019600	Weak transcription	Brain Germinal Matrix	brain
7	chr5:112017600-112019600	Weak transcription	Fetal Heart	heart
8	chr5:112017600-112019600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:112017600-112020000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:112017600-112020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr5:112017800-112019600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr5:112017800-112019600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr5:112017800-112019600	Weak transcription	GM12878-XiMat	blood
14	chr5:112018000-112020200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:112018200-112019600	Weak transcription	HSMM	muscle
16	chr5:112018400-112019600	Weak transcription	NHLF	lung
17	chr5:112018400-112019800	Weak transcription	Fetal Brain Male	brain
18	chr5:112018400-112020600	Weak transcription	Fetal Brain Female	brain
19	chr5:112018800-112019600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr5:112018800-112019600	Weak transcription	HSMMtube	muscle
21	chr5:112018800-112020000	Weak transcription	Osteobl	bone
22	chr5:112018800-112024200	Weak transcription	K562	blood

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