Variant report
| Variant | rs7718899 |
|---|---|
| Chromosome Location | chr5:112014670-112014671 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11241181 | 1.00[AMR][1000 genomes] |
| rs11750684 | 1.00[AMR][1000 genomes] |
| rs13361581 | 1.00[AMR][1000 genomes] |
| rs13436450 | 1.00[AMR][1000 genomes] |
| rs1441368 | 1.00[AMR][1000 genomes] |
| rs1441369 | 1.00[AMR][1000 genomes] |
| rs2464806 | 1.00[AMR][1000 genomes] |
| rs2464812 | 1.00[AMR][1000 genomes] |
| rs369952 | 1.00[AMR][1000 genomes] |
| rs380589 | 1.00[AMR][1000 genomes] |
| rs392179 | 1.00[AMR][1000 genomes] |
| rs415045 | 1.00[AMR][1000 genomes] |
| rs464338 | 1.00[AMR][1000 genomes] |
| rs468293 | 1.00[AMR][1000 genomes] |
| rs469336 | 1.00[AMR][1000 genomes] |
| rs4705617 | 1.00[AMR][1000 genomes] |
| rs4705753 | 1.00[AMR][1000 genomes] |
| rs9326864 | 1.00[AMR][1000 genomes] |
| rs9986303 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv599368 | chr5:111399885-112032675 | Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 2 | nsv830450 | chr5:111964170-112134510 | Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:112014400-112020200 | Weak transcription | Colon Smooth Muscle | Colon |
