Variant report

Variant	rs1442050
Chromosome Location	chr8:84938503-84938504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10113569	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777433	1.00[ASN][1000 genomes]
rs11782758	1.00[ASN][1000 genomes]
rs11984648	1.00[ASN][1000 genomes]
rs11987598	1.00[ASN][1000 genomes]
rs11991853	1.00[ASN][1000 genomes]
rs11992457	1.00[ASN][1000 genomes]
rs11992556	1.00[ASN][1000 genomes]
rs13248069	1.00[ASN][1000 genomes]
rs13267324	1.00[ASN][1000 genomes]
rs13267861	1.00[ASN][1000 genomes]
rs13268001	1.00[ASN][1000 genomes]
rs13268144	1.00[ASN][1000 genomes]
rs13269519	1.00[ASN][1000 genomes]
rs13274795	1.00[ASN][1000 genomes]
rs13275936	1.00[ASN][1000 genomes]
rs13276374	1.00[ASN][1000 genomes]
rs13276529	1.00[ASN][1000 genomes]
rs13278138	1.00[ASN][1000 genomes]
rs13278524	1.00[ASN][1000 genomes]
rs13278818	1.00[ASN][1000 genomes]
rs13279831	1.00[ASN][1000 genomes]
rs13282075	1.00[ASN][1000 genomes]
rs1372468	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1437506	1.00[ASN][1000 genomes]
rs1437507	1.00[ASN][1000 genomes]
rs1437508	1.00[ASN][1000 genomes]
rs1437516	1.00[ASN][1000 genomes]
rs1437517	1.00[ASN][1000 genomes]
rs17700460	1.00[ASN][1000 genomes]
rs17778563	1.00[ASN][1000 genomes]
rs17778624	1.00[ASN][1000 genomes]
rs34067813	1.00[ASN][1000 genomes]
rs34256177	1.00[ASN][1000 genomes]
rs34633122	1.00[ASN][1000 genomes]
rs34756801	1.00[ASN][1000 genomes]
rs34811575	1.00[ASN][1000 genomes]
rs34881709	1.00[ASN][1000 genomes]
rs35106787	1.00[ASN][1000 genomes]
rs35162331	1.00[ASN][1000 genomes]
rs35175004	1.00[ASN][1000 genomes]
rs35218036	1.00[ASN][1000 genomes]
rs35586249	1.00[ASN][1000 genomes]
rs35634584	1.00[ASN][1000 genomes]
rs35714561	1.00[ASN][1000 genomes]
rs35910267	1.00[ASN][1000 genomes]
rs36036849	1.00[ASN][1000 genomes]
rs36171128	1.00[ASN][1000 genomes]
rs36174269	1.00[ASN][1000 genomes]
rs36180485	1.00[ASN][1000 genomes]
rs36183226	1.00[ASN][1000 genomes]
rs4478570	1.00[ASN][1000 genomes]
rs4612340	1.00[ASN][1000 genomes]
rs66725806	1.00[ASN][1000 genomes]
rs67284322	1.00[ASN][1000 genomes]
rs67963191	1.00[ASN][1000 genomes]
rs7014239	1.00[ASN][1000 genomes]
rs7017720	1.00[ASN][1000 genomes]
rs7018202	1.00[ASN][1000 genomes]
rs71522936	1.00[ASN][1000 genomes]
rs71522937	1.00[ASN][1000 genomes]
rs71522938	1.00[ASN][1000 genomes]
rs71522939	1.00[ASN][1000 genomes]
rs71522940	1.00[ASN][1000 genomes]
rs72694338	1.00[ASN][1000 genomes]
rs72694340	1.00[ASN][1000 genomes]
rs72694341	1.00[ASN][1000 genomes]
rs72694342	1.00[ASN][1000 genomes]
rs72694346	1.00[ASN][1000 genomes]
rs72694347	1.00[ASN][1000 genomes]
rs7462992	1.00[ASN][1000 genomes]
rs7832359	1.00[ASN][1000 genomes]
rs7842797	1.00[ASN][1000 genomes]
rs7842846	1.00[ASN][1000 genomes]
rs7844610	1.00[ASN][1000 genomes]
rs9692957	1.00[ASN][1000 genomes]
rs9692990	1.00[ASN][1000 genomes]
rs9692999	1.00[ASN][1000 genomes]
rs9693020	1.00[ASN][1000 genomes]
rs9694221	1.00[ASN][1000 genomes]
rs9694233	1.00[ASN][1000 genomes]
rs9694242	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753846	chr8:84637092-85239703	Active TSS Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1442050	E2F5	cis	cerebellum	SCAN
rs1442050	SLC10A5	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:84937200-84938600	Enhancers	Fetal Intestine Small	intestine
2	chr8:84937200-84939400	Enhancers	Fetal Intestine Large	intestine
3	chr8:84937800-84938600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:84937800-84938800	Enhancers	Small Intestine	intestine
5	chr8:84938200-84939000	Enhancers	Liver	Liver

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