Variant report

Variant	rs1442212
Chromosome Location	chr6:46259716-46259717
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46259240..46261428-chr6:46264123..46265691,2	MCF-7	breast:

rs_ID	r²[population]
rs1372570	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1372571	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs1442214	1.00[AMR][1000 genomes]
rs56893394	1.00[AMR][1000 genomes]
rs57387297	1.00[AMR][1000 genomes]
rs7766177	1.00[AMR][1000 genomes]
rs7772923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9463200	1.00[AMR][1000 genomes]
rs9472735	1.00[AMR][1000 genomes]

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46249000-46261400	Weak transcription	Brain Substantia Nigra	brain
2	chr6:46249800-46271600	Weak transcription	NHDF-Ad	bronchial
3	chr6:46252800-46264800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:46254800-46259800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr6:46254800-46260000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:46255800-46260000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:46256000-46260000	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:46256200-46259800	Enhancers	Fetal Kidney	kidney
9	chr6:46256400-46259800	Enhancers	HUVEC	blood vessel
10	chr6:46256800-46261400	Weak transcription	Brain Angular Gyrus	brain
11	chr6:46257600-46259800	Enhancers	HSMMtube	muscle
12	chr6:46257800-46260000	Enhancers	Brain Hippocampus Middle	brain
13	chr6:46257800-46260000	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:46258000-46261400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr6:46258400-46259800	Enhancers	Psoas Muscle	Psoas
16	chr6:46258600-46259800	Enhancers	Brain Anterior Caudate	brain
17	chr6:46258600-46260000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:46258600-46263800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:46258800-46260000	Enhancers	Fetal Heart	heart
20	chr6:46259000-46259800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:46259000-46259800	Enhancers	GM12878-XiMat	blood
22	chr6:46259200-46262800	Weak transcription	Right Ventricle	heart
23	chr6:46259400-46260000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:46259400-46262800	Weak transcription	Left Ventricle	heart
25	chr6:46259400-46262800	Weak transcription	Right Atrium	heart
26	chr6:46259400-46263200	Weak transcription	Aorta	Aorta
27	chr6:46259600-46264600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:46259600-46266000	Weak transcription	Ovary	ovary

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