Variant report

Variant	rs57387297
Chromosome Location	chr6:46294983-46294984
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:46294891..46297163-chr6:46323206..46324846,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1372570	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1372571	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1442212	1.00[AMR][1000 genomes]
rs1442214	1.00[AMR][1000 genomes]
rs56893394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7766177	1.00[AMR][1000 genomes]
rs7772923	1.00[AMR][1000 genomes]
rs9463200	1.00[AMR][1000 genomes]
rs9472735	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830653	chr6:46277573-46434991	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46283400-46295600	Weak transcription	Pancreas	Pancrea
2	chr6:46290600-46297600	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:46291200-46295800	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr6:46292000-46297800	Enhancers	Fetal Lung	lung
5	chr6:46293800-46295200	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr6:46293800-46295800	Enhancers	Stomach Smooth Muscle	stomach
7	chr6:46293800-46296000	Weak transcription	Fetal Stomach	stomach
8	chr6:46294000-46295400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:46294000-46295400	Weak transcription	Adipose Nuclei	Adipose
10	chr6:46294000-46295400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:46294000-46295800	Enhancers	Brain Germinal Matrix	brain
12	chr6:46294000-46296800	Weak transcription	HSMMtube	muscle
13	chr6:46294000-46297400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:46294200-46295000	Weak transcription	Ovary	ovary
15	chr6:46294200-46295200	Weak transcription	Left Ventricle	heart
16	chr6:46294200-46295400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr6:46294200-46295600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr6:46294200-46295600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:46294200-46295800	Enhancers	Brain Hippocampus Middle	brain
20	chr6:46294200-46295800	Enhancers	Brain Substantia Nigra	brain
21	chr6:46294200-46296000	Enhancers	NHDF-Ad	bronchial
22	chr6:46294200-46296200	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr6:46294200-46296400	Enhancers	Brain Angular Gyrus	brain
24	chr6:46294200-46296400	Enhancers	Brain Anterior Caudate	brain
25	chr6:46294200-46296600	Enhancers	Brain Cingulate Gyrus	brain
26	chr6:46294200-46296600	Weak transcription	Right Atrium	heart
27	chr6:46294200-46296600	Weak transcription	Right Ventricle	heart
28	chr6:46294200-46297000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:46294200-46297200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:46294200-46297200	Weak transcription	NHLF	lung
31	chr6:46294200-46297400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:46294200-46299800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:46294400-46296000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:46294400-46297200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:46294600-46295200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:46294600-46295800	Enhancers	Aorta	Aorta
37	chr6:46294600-46297200	Weak transcription	Fetal Heart	heart
38	chr6:46294800-46295400	Weak transcription	Fetal Brain Male	brain
39	chr6:46294800-46296800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:46294800-46297800	Enhancers	Colon Smooth Muscle	Colon

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