Variant report

Variant	rs1442238
Chromosome Location	chr7:52743852-52743853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1528986	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1661619	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1661632	0.89[ASN][1000 genomes]
rs1661634	0.87[ASN][1000 genomes]
rs1729875	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1729882	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2439741	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2920011	0.87[ASN][1000 genomes]
rs73120141	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7804167	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019211	chr7:52706930-52785302	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv606989	chr7:52722432-52748535	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv606990	chr7:52724902-52750565	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv17724	chr7:52730103-52745307	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv464446	chr7:52733291-52748535	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv464447	chr7:52733291-52748535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv606992	chr7:52733291-52748535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv606993	chr7:52733291-52750565	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526376	chr7:52733528-52748535	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv464448	chr7:52733528-52752234	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv606994	chr7:52733528-52752234	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv606995	chr7:52733528-52757076	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv981771	chr7:52735792-52762504	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv2764055	chr7:52736727-52749772	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52739800-52746200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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