Variant report

Variant	rs1661632
Chromosome Location	chr7:52706218-52706219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1442238	0.89[ASN][1000 genomes]
rs1528986	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1661619	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1661634	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1729875	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1729882	0.88[ASN][1000 genomes]
rs2439741	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2920011	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73120141	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7804167	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1661632	C7orf72	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52703000-52706800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:52703200-52706600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr7:52703200-52706600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr7:52703200-52706800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:52703200-52706800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:52703200-52706800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:52703200-52706800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr7:52703400-52706400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:52703400-52706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:52703400-52706600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr7:52703400-52706600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr7:52703400-52706800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:52703400-52706800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:52703400-52707800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:52705000-52706800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:52706200-52707600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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