Variant report

Variant	rs1442569
Chromosome Location	chr1:190322727-190322728
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10429905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10800941	0.93[CEU][hapmap]
rs10920705	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10920711	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap]
rs10920715	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs12025018	0.93[CEU][hapmap]
rs12030570	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs12032164	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12035557	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12060478	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12065497	1.00[CEU][hapmap];0.86[GIH][hapmap];0.92[LWK][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs12082492	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs12091129	0.93[CEU][hapmap]
rs12095592	0.85[CEU][hapmap]
rs12097042	0.93[CEU][hapmap]
rs12724000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12732902	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes]
rs1442568	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1592251	0.82[CHD][hapmap]
rs16832305	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16832366	0.93[CEU][hapmap]
rs3931875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs4845237	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs61818785	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61818787	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6658194	0.93[CEU][hapmap]
rs6660355	0.93[CEU][hapmap]
rs6691819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs718609	0.82[ASW][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.84[LWK][hapmap];0.86[MKK][hapmap]
rs7527690	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7547903	0.93[CEU][hapmap]
rs980043	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1013402	chr1:190197674-190332464	Enhancers ZNF genes & repeats Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv535246	chr1:190197674-190332464	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv430013	chr1:190288297-190351677	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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