Variant report

Variant	rs16832305
Chromosome Location	chr1:190351156-190351157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:190350737..190353263-chr1:190362738..190364673,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10429905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs10800941	0.93[CEU][hapmap]
rs10920705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10920711	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap]
rs10920715	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[EUR][1000 genomes]
rs12025018	0.93[CEU][hapmap]
rs12030570	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12032164	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12035557	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12060478	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12065497	1.00[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs12082492	1.00[CEU][hapmap];0.93[GIH][hapmap];0.81[TSI][hapmap];0.90[EUR][1000 genomes]
rs12091129	0.93[CEU][hapmap]
rs12095592	0.85[CEU][hapmap]
rs12097042	0.93[CEU][hapmap]
rs12724000	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12732902	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[EUR][1000 genomes]
rs1442568	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs1442569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap]
rs1592251	0.82[CHD][hapmap]
rs16832366	0.93[CEU][hapmap]
rs3931875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4845237	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs61818785	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61818787	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6658194	0.93[CEU][hapmap]
rs6660355	0.93[CEU][hapmap]
rs6691819	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6691910	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs718609	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs7527690	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7547903	0.93[CEU][hapmap]
rs980043	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548532	chr1:189758772-190371671	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv932040	chr1:190005334-190914580	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv430013	chr1:190288297-190351677	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:190350200-190351200	Active TSS	Brain Anterior Caudate	brain
2	chr1:190350400-190352600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:190350600-190351200	Weak transcription	Brain Germinal Matrix	brain
4	chr1:190350600-190352800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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