Variant report

Variant	rs1442645
Chromosome Location	chr15:100008597-100008598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100006765..100009301-chr15:100010187..100012699,3	K562	blood:
2	chr15:100005826..100008699-chr15:100011873..100013969,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1020255	0.93[EUR][1000 genomes]
rs1020256	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10902545	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10902546	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10902547	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11630522	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11632243	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632288	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11632631	0.81[EUR][1000 genomes]
rs11633249	0.89[EUR][1000 genomes]
rs11637736	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12903278	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12904009	0.93[EUR][1000 genomes]
rs12909847	0.85[EUR][1000 genomes]
rs1867091	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1867092	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1867093	0.89[EUR][1000 genomes]
rs1867094	0.89[EUR][1000 genomes]
rs2119941	0.93[EUR][1000 genomes]
rs34457611	0.89[EUR][1000 genomes]
rs34666134	0.88[EUR][1000 genomes]
rs34974576	0.86[EUR][1000 genomes]
rs35015146	0.90[EUR][1000 genomes]
rs35395415	0.90[EUR][1000 genomes]
rs36112416	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4965251	0.92[EUR][1000 genomes]
rs56159751	0.92[EUR][1000 genomes]
rs56197704	0.86[EUR][1000 genomes]
rs7165507	0.83[EUR][1000 genomes]
rs7167860	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7172915	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7180712	0.86[EUR][1000 genomes]
rs7181817	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv457278	chr15:100002468-100015179	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv570729	chr15:100002468-100015179	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100007200-100012400	Weak transcription	Spleen	Spleen
2	chr15:100007400-100009000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:100007400-100012400	Weak transcription	NH-A	brain
4	chr15:100007600-100009000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:100007800-100012800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:100007800-100013000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr15:100008000-100008800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:100008000-100013000	Weak transcription	Thymus	Thymus
9	chr15:100008000-100014400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:100008200-100008800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:100008200-100009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:100008200-100013000	Weak transcription	Right Ventricle	heart
13	chr15:100008200-100020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr15:100008400-100013600	Weak transcription	Lung	lung
15	chr15:100008400-100016600	Weak transcription	Hela-S3	cervix

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