Variant report

Variant	rs11637736
Chromosome Location	chr15:100017053-100017054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:100016579-100017205	MCF-7	breast:	n/a	n/a
2	MAX	chr15:100016594-100017366	A549	lung:	n/a	n/a
3	TEAD4	chr15:100016408-100017512	SK-N-SH	brain:	n/a	n/a
4	ELF1	chr15:100016856-100017417	GM12878	blood:	n/a	n/a
5	SP1	chr15:100016447-100017281	A549	lung:	n/a	chr15:100017185-100017199
6	RCOR1	chr15:100016678-100017102	Hela-S3	cervix:	n/a	n/a
7	FOSL2	chr15:100016556-100017127	SK-N-SH	brain:	n/a	chr15:100016828-100016836 chr15:100016590-100016602 chr15:100016826-100016838 chr15:100016827-100016838
8	MAX	chr15:100016682-100017074	Hela-S3	cervix:	n/a	n/a
9	RAD21	chr15:100016588-100017133	A549	lung:	n/a	n/a
10	E2F4	chr15:100016698-100017127	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr15:100016630-100017261	HUVEC	blood vessel:	n/a	chr15:100017208-100017218 chr15:100016828-100016836 chr15:100017208-100017218 chr15:100016826-100016837 chr15:100016826-100016838 chr15:100017209-100017217 chr15:100016869-100016880 chr15:100017205-100017216
12	NR3C1	chr15:100016605-100017127	A549	lung:	n/a	chr15:100016827-100016836
13	GATA3	chr15:100016414-100017182	MCF-7	breast:	n/a	chr15:100016826-100016835
14	PBX3	chr15:100016294-100017448	SK-N-SH	brain:	n/a	n/a
15	GATA3	chr15:100016333-100017279	MCF-7	breast:	n/a	chr15:100016826-100016835
16	POLR2A	chr15:100016469-100017427	U87	brain:	n/a	n/a
17	GATA3	chr15:100016247-100017529	SK-N-SH	brain:	n/a	chr15:100017358-100017368 chr15:100016826-100016835
18	REST	chr15:100016651-100017397	SK-N-SH	brain:	n/a	chr15:100017269-100017287 chr15:100016961-100016981
19	MAX	chr15:100016495-100017525	SK-N-SH	brain:	n/a	n/a
20	MYC	chr15:100016508-100017118	MCF10A-Er-Src	breast:	n/a	n/a
21	FOS	chr15:100016537-100017101	MCF10A-Er-Src	breast:	n/a	chr15:100016828-100016836 chr15:100016590-100016602 chr15:100016826-100016837 chr15:100016826-100016838 chr15:100016869-100016880
22	TCF12	chr15:100016506-100017246	A549	lung:	n/a	n/a
23	FOSL2	chr15:100016626-100017095	MCF-7	breast:	n/a	chr15:100016828-100016836 chr15:100016826-100016838 chr15:100016827-100016838
24	EP300	chr15:100016319-100017381	SK-N-SH	brain:	n/a	chr15:100016593-100016607 chr15:100016594-100016608
25	FOS	chr15:100016628-100017123	MCF10A-Er-Src	breast:	n/a	chr15:100016828-100016836 chr15:100016826-100016837 chr15:100016826-100016838 chr15:100016869-100016880
26	REST	chr15:100016618-100017118	A549	lung:	n/a	chr15:100016961-100016981
27	FOXA2	chr15:100016714-100017261	A549	lung:	n/a	n/a
28	EP300	chr15:100016333-100017608	SK-N-SH	brain:	n/a	chr15:100016593-100016607 chr15:100016594-100016608
29	RXRA	chr15:100016387-100017437	SK-N-SH	brain:	n/a	n/a
30	MTA3	chr15:100016847-100017620	GM12878	blood:	n/a	n/a
31	FOSL2	chr15:100016604-100017060	A549	lung:	n/a	chr15:100016828-100016836 chr15:100016826-100016838 chr15:100016827-100016838
32	FOSL2	chr15:100016596-100017054	HepG2	liver:	n/a	chr15:100016828-100016836 chr15:100016826-100016838 chr15:100016827-100016838
33	TEAD4	chr15:100016393-100017554	SK-N-SH	brain:	n/a	n/a
34	MAX	chr15:100016580-100017492	A549	lung:	n/a	n/a
35	FOSL2	chr15:100016399-100017373	A549	lung:	n/a	chr15:100017208-100017218 chr15:100017359-100017368 chr15:100016828-100016836 chr15:100017208-100017218 chr15:100016590-100016602 chr15:100016826-100016838 chr15:100017209-100017217 chr15:100016827-100016838 chr15:100017205-100017216
36	FOS	chr15:100016471-100017152	MCF10A-Er-Src	breast:	n/a	chr15:100016828-100016836 chr15:100016590-100016602 chr15:100016826-100016837 chr15:100016826-100016838 chr15:100016869-100016880
37	GABPA	chr15:100016628-100017060	A549	lung:	n/a	n/a
38	USF1	chr15:100016642-100017070	A549	lung:	n/a	n/a
39	PBX3	chr15:100016381-100017454	SK-N-SH	brain:	n/a	n/a
40	GATA2	chr15:100016518-100017083	SH-SY5Y	brain:	n/a	chr15:100016826-100016835
41	RAD21	chr15:100016571-100017138	SK-N-SH_RA	brain:	n/a	n/a
42	POLR2A	chr15:100016516-100017502	SK-N-SH	brain:	n/a	n/a
43	MAX	chr15:100016713-100017580	NB4	blood:	n/a	n/a
44	E2F6	chr15:100016663-100017178	A549	lung:	n/a	n/a
45	STAT3	chr15:100016469-100017102	MCF10A-Er-Src	breast:	n/a	n/a
46	JUND	chr15:100016366-100017480	SK-N-SH	brain:	n/a	chr15:100017208-100017218 chr15:100016826-100016837 chr15:100017359-100017368 chr15:100016828-100016836 chr15:100017208-100017218 chr15:100016590-100016602 chr15:100016826-100016838 chr15:100017209-100017217 chr15:100016869-100016880 chr15:100017205-100017216
47	BHLHE40	chr15:100016683-100017056	HepG2	liver:	n/a	n/a
48	ZNF143	chr15:100016940-100017057	Hela-S3	cervix:	n/a	n/a
49	TCF12	chr15:100016263-100017626	SK-N-SH	brain:	n/a	n/a
50	HDAC2	chr15:100016637-100017102	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100013320..100017207-chr15:100104527..100106980,4	MCF-7	breast:

Variant related genes	Relation type
MEF2A	TF binding region
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1020255	0.90[EUR][1000 genomes]
rs1020256	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10902545	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10902546	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10902547	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11630522	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11632243	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11632288	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11632631	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11633249	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs12903278	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12904009	0.92[EUR][1000 genomes]
rs12909847	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1442645	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1867091	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1867092	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1867093	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs1867094	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs2119941	0.90[EUR][1000 genomes]
rs34457611	0.94[EUR][1000 genomes]
rs34666134	0.86[EUR][1000 genomes]
rs34974576	0.84[EUR][1000 genomes]
rs35015146	0.88[EUR][1000 genomes]
rs35395415	0.88[EUR][1000 genomes]
rs36112416	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4965251	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs56159751	0.89[EUR][1000 genomes]
rs56197704	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7167860	0.86[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7172915	0.91[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7180712	0.85[EUR][1000 genomes]
rs7181817	0.90[EUR][1000 genomes]
rs920657	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055008	chr15:99477144-100019861	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
8	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100008200-100020600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:100012400-100018200	Enhancers	Stomach Mucosa	stomach
3	chr15:100012400-100018600	Enhancers	Spleen	Spleen
4	chr15:100012400-100018800	Enhancers	Right Atrium	heart
5	chr15:100012600-100018600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr15:100012600-100019000	Enhancers	Fetal Heart	heart
7	chr15:100012800-100018800	Enhancers	Fetal Lung	lung
8	chr15:100013000-100018600	Enhancers	Right Ventricle	heart
9	chr15:100013000-100018800	Enhancers	Fetal Muscle Trunk	muscle
10	chr15:100013000-100019400	Enhancers	Fetal Thymus	thymus
11	chr15:100013200-100019000	Enhancers	Fetal Muscle Leg	muscle
12	chr15:100013600-100018400	Enhancers	Placenta	Placenta
13	chr15:100013600-100018400	Enhancers	Lung	lung
14	chr15:100013800-100018200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr15:100013800-100018200	Enhancers	HMEC	breast
16	chr15:100014000-100018600	Enhancers	HSMMtube	muscle
17	chr15:100014000-100019200	Enhancers	Fetal Stomach	stomach
18	chr15:100014600-100017400	Enhancers	Colonic Mucosa	Colon
19	chr15:100014800-100018800	Enhancers	Left Ventricle	heart
20	chr15:100014800-100020200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:100014800-100026800	Weak transcription	Aorta	Aorta
22	chr15:100015200-100017400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr15:100015200-100017600	Weak transcription	Fetal Kidney	kidney
24	chr15:100015200-100018600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:100015400-100018200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:100015400-100018400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr15:100015600-100017600	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:100015600-100018000	Enhancers	Fetal Brain Male	brain
29	chr15:100015600-100018400	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr15:100015600-100018600	Enhancers	NHDF-Ad	bronchial
31	chr15:100015600-100018800	Enhancers	Placenta Amnion	Placenta Amnion
32	chr15:100015800-100017800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:100015800-100017800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr15:100015800-100017800	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr15:100015800-100019000	Enhancers	Dnd41	blood
36	chr15:100016000-100019000	Enhancers	Primary B cells from cord blood	blood
37	chr15:100016000-100019000	Enhancers	Primary B cells from peripheral blood	blood
38	chr15:100016000-100019000	Enhancers	Thymus	Thymus
39	chr15:100016200-100017400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:100016200-100017800	Enhancers	Fetal Intestine Small	intestine
41	chr15:100016200-100018200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:100016200-100018200	Enhancers	Fetal Intestine Large	intestine
43	chr15:100016200-100018200	Enhancers	HUVEC	blood vessel
44	chr15:100016200-100019000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:100016200-100019600	Enhancers	Primary hematopoietic stem cells	blood
46	chr15:100016400-100017200	Flanking Active TSS	A549	lung
47	chr15:100016400-100017400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:100016400-100017400	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr15:100016400-100018400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr15:100016400-100018600	Enhancers	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links