Variant report

Variant	rs920657
Chromosome Location	chr15:100026262-100026263
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:100000166..100003019-chr15:100025458..100027654,2	MCF-7	breast:
2	chr15:100024061..100027015-chr15:100105805..100107959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1020255	0.82[EUR][1000 genomes]
rs1020256	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11632631	0.84[EUR][1000 genomes]
rs11633249	0.80[CEU][hapmap]
rs11637736	0.85[JPT][hapmap]
rs12909847	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867093	0.80[CEU][hapmap]
rs1867094	0.80[CEU][hapmap]
rs2119941	0.81[EUR][1000 genomes]
rs4965251	0.81[EUR][1000 genomes]
rs56159751	0.81[EUR][1000 genomes]
rs56197704	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7167860	0.84[CEU][hapmap]
rs7181817	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv1050527	chr15:99983054-100035436	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100014800-100026800	Weak transcription	Aorta	Aorta
2	chr15:100018400-100026800	Weak transcription	Gastric	stomach
3	chr15:100024600-100026400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:100025000-100027200	Enhancers	Fetal Heart	heart
5	chr15:100025200-100026600	Enhancers	Spleen	Spleen
6	chr15:100025200-100027800	Enhancers	Lung	lung
7	chr15:100025400-100026400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:100025400-100026400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:100025400-100026400	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr15:100025400-100026400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
11	chr15:100025400-100026400	Enhancers	Fetal Muscle Trunk	muscle
12	chr15:100025400-100026400	Enhancers	Fetal Muscle Leg	muscle
13	chr15:100025400-100026600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:100025400-100026600	Enhancers	Left Ventricle	heart
15	chr15:100025400-100026600	Enhancers	Right Atrium	heart
16	chr15:100025400-100026600	Enhancers	Dnd41	blood
17	chr15:100025400-100027000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:100025400-100027400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:100025400-100027600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr15:100025400-100027600	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr15:100025400-100027800	Enhancers	Placenta	Placenta
22	chr15:100025400-100028000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:100025400-100028600	Enhancers	Fetal Lung	lung
24	chr15:100025600-100026400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr15:100025600-100026400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr15:100025600-100026400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr15:100025600-100026400	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr15:100025600-100026400	Enhancers	Right Ventricle	heart
29	chr15:100025600-100026400	Enhancers	Stomach Smooth Muscle	stomach
30	chr15:100025600-100026600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:100025600-100026600	Enhancers	NHDF-Ad	bronchial
32	chr15:100025600-100026800	Enhancers	Esophagus	oesophagus
33	chr15:100025600-100027800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
34	chr15:100025800-100026400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
35	chr15:100025800-100026400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:100025800-100026400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr15:100025800-100026400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr15:100025800-100026400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:100025800-100026400	Enhancers	Brain Germinal Matrix	brain
40	chr15:100025800-100026400	Weak transcription	Colonic Mucosa	Colon
41	chr15:100025800-100026400	Enhancers	Duodenum Mucosa	Duodenum
42	chr15:100025800-100026400	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr15:100025800-100026400	Enhancers	Fetal Brain Female	brain
44	chr15:100025800-100026600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:100025800-100026600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
46	chr15:100025800-100026600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:100025800-100027200	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr15:100025800-100027200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
49	chr15:100025800-100027200	Active TSS	Rectal Smooth Muscle	rectum
50	chr15:100025800-100027600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links