Variant report

Variant	rs1442990
Chromosome Location	chr18:28045575-28045576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12455148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1442987	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16948099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2419041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62080033	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7226777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7228536	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs726345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8083146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8090813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8096104	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8096781	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9949442	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9949599	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9963970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv34009	chr18:27957966-28115014	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909508	chr18:27986202-28050968	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv909509	chr18:27986202-28054261	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv909510	chr18:27987508-28050968	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv576628	chr18:28005959-28063269	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv2242	chr18:28014039-28059387	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv909511	chr18:28019208-28049708	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28044200-28045800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr18:28044800-28045600	Enhancers	Brain Substantia Nigra	brain
3	chr18:28044800-28045600	Enhancers	Fetal Lung	lung
4	chr18:28045000-28045600	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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