Variant report

Variant	rs8096781
Chromosome Location	chr18:28043475-28043476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12455148	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1442987	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1442990	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1442998	0.91[ASN][1000 genomes]
rs16948099	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2419041	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34667742	0.91[ASN][1000 genomes]
rs4429366	0.92[ASN][1000 genomes]
rs62080033	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7226777	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7228536	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs726345	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8083146	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8090813	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8096104	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9949442	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9949599	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9963970	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057946	chr18:27239754-28146129	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
3	esv34009	chr18:27957966-28115014	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv909508	chr18:27986202-28050968	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv909509	chr18:27986202-28054261	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv909510	chr18:27987508-28050968	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv576628	chr18:28005959-28063269	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv2242	chr18:28014039-28059387	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv909511	chr18:28019208-28049708	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28037400-28044200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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