Variant report

Variant	rs1443535
Chromosome Location	chr4:82119908-82119909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10033237	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1078980	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11722019	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11722928	0.94[EUR][1000 genomes]
rs11722958	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11736177	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11941243	0.89[EUR][1000 genomes]
rs1982283	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3733553	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6846241	0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs751295	0.93[EUR][1000 genomes]
rs7687935	0.89[EUR][1000 genomes]
rs7688672	0.89[EUR][1000 genomes]
rs7696645	0.89[EUR][1000 genomes]
rs9992933	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82116000-82121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:82116200-82120200	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:82116200-82121200	Weak transcription	NHLF	lung
4	chr4:82116600-82120000	Genic enhancers	Fetal Intestine Small	intestine
5	chr4:82117000-82120200	Genic enhancers	Fetal Intestine Large	intestine
6	chr4:82117400-82121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:82117600-82120400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:82117600-82121200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:82118600-82121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:82119200-82120000	Enhancers	Fetal Heart	heart
11	chr4:82119200-82120000	Enhancers	NHDF-Ad	bronchial
12	chr4:82119400-82120000	Enhancers	Fetal Brain Female	brain
13	chr4:82119400-82120000	Enhancers	Fetal Stomach	stomach
14	chr4:82119600-82120200	Enhancers	Fetal Brain Male	brain
15	chr4:82119600-82120800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:82119800-82121800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:82119800-82125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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