Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BMP3-1	chr4:82114214-82114549	ENSG00000251059.1

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10033237	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1078980	0.94[AMR][1000 genomes]
rs11722019	0.94[AMR][1000 genomes]
rs11722928	0.93[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs11722958	0.91[AMR][1000 genomes]
rs11736177	0.98[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes]
rs11941243	0.87[AMR][1000 genomes]
rs1348399	0.86[CEU][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1443535	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17005090	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs1982283	0.93[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.94[AMR][1000 genomes]
rs2102818	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28550691	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58629505	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6846241	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6850526	0.81[CEU][hapmap]
rs751295	0.86[AMR][1000 genomes]
rs7687935	0.90[GIH][hapmap];0.91[MEX][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes]
rs7688672	0.93[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.87[AMR][1000 genomes]
rs7696645	0.93[GIH][hapmap];0.80[TSI][hapmap];0.87[AMR][1000 genomes]
rs9992933	0.98[GIH][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82093600-82115400	Weak transcription	NHDF-Ad	bronchial
2	chr4:82100000-82117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:82105600-82117200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:82106200-82115200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:82113400-82114600	Enhancers	Fetal Intestine Small	intestine
6	chr4:82113400-82116800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:82113600-82115200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:82113800-82114600	Enhancers	Fetal Intestine Large	intestine
9	chr4:82114400-82114600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:82114400-82114600	Enhancers	Duodenum Smooth Muscle	Duodenum

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