Variant report

Variant	rs1348399
Chromosome Location	chr4:82102862-82102863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10033237	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs1078980	0.95[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11722019	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11722928	0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11722958	0.84[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11736177	0.95[CHB][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11941243	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1545287	0.82[JPT][hapmap]
rs17005090	0.81[CEU][hapmap]
rs1972127	0.82[JPT][hapmap]
rs1982283	0.95[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2102818	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28550691	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733553	0.86[CEU][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58629505	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6846241	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs751295	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7687935	0.91[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7688672	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7696645	0.95[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9992933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv829984	chr4:81979988-82113977	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82086600-82104800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:82088000-82113800	Weak transcription	Fetal Intestine Large	intestine
3	chr4:82088200-82114400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:82090600-82104400	Weak transcription	Fetal Intestine Small	intestine
5	chr4:82093600-82115400	Weak transcription	NHDF-Ad	bronchial
6	chr4:82100000-82105800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:82100000-82117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:82100600-82104200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:82102600-82104400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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