Variant report

Variant	rs17005090
Chromosome Location	chr4:82121809-82121810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10033237	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs1348399	0.81[CEU][hapmap]
rs2028643	0.81[CEU][hapmap]
rs2102818	0.80[EUR][1000 genomes]
rs3733553	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs58629505	0.80[EUR][1000 genomes]
rs6846241	0.86[EUR][1000 genomes]
rs733241	0.81[CEU][hapmap]
rs7656323	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82119800-82125000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82120000-82123200	Weak transcription	Fetal Brain Female	brain
3	chr4:82120200-82125800	Weak transcription	Fetal Intestine Small	intestine
4	chr4:82120800-82122000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:82120800-82122200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:82121000-82122200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:82121000-82122200	Enhancers	NHDF-Ad	bronchial
8	chr4:82121400-82122000	Weak transcription	NHLF	lung
9	chr4:82121400-82122800	Strong transcription	Fetal Intestine Large	intestine
10	chr4:82121600-82123000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:82121600-82125200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:82121600-82125800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:82121800-82123600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links