Variant report

Variant	rs733241
Chromosome Location	chr4:82116677-82116678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17005082	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs17005086	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005090	0.81[CEU][hapmap]
rs2028643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57715585	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6849299	0.95[YRI][hapmap];0.93[AMR][1000 genomes]
rs6850526	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs6857838	0.82[EUR][1000 genomes]
rs731112	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7656323	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7656582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82100000-82117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82105600-82117200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:82113400-82116800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:82114600-82117000	Weak transcription	Fetal Intestine Large	intestine
5	chr4:82114800-82118400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:82115200-82117200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:82115400-82116800	Enhancers	NHDF-Ad	bronchial
8	chr4:82116000-82117400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:82116000-82117600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:82116000-82121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:82116200-82120200	Enhancers	Rectal Smooth Muscle	rectum
12	chr4:82116200-82121200	Weak transcription	NHLF	lung
13	chr4:82116600-82117000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:82116600-82120000	Genic enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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