Variant report

Variant	rs6849299
Chromosome Location	chr4:82118996-82118997
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17005069	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005071	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005073	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005074	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005075	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005078	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005080	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17005082	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17005086	0.95[AFR][1000 genomes]
rs2028643	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs3733551	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41414947	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56405539	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs731112	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733241	0.95[YRI][hapmap];0.93[AMR][1000 genomes]
rs751296	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs751297	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656323	1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9884233	0.81[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82116000-82121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:82116200-82120200	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:82116200-82121200	Weak transcription	NHLF	lung
4	chr4:82116600-82120000	Genic enhancers	Fetal Intestine Small	intestine
5	chr4:82116800-82119200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr4:82117000-82120200	Genic enhancers	Fetal Intestine Large	intestine
7	chr4:82117200-82119200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:82117400-82121000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:82117600-82119200	Weak transcription	NHDF-Ad	bronchial
10	chr4:82117600-82120400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:82117600-82121200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr4:82117800-82119200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:82118000-82119600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:82118400-82119800	Enhancers	Colon Smooth Muscle	Colon
15	chr4:82118600-82121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:82118800-82119600	Enhancers	Stomach Smooth Muscle	stomach

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