Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17005069	0.89[EUR][1000 genomes]
rs17005071	0.89[EUR][1000 genomes]
rs17005073	0.89[EUR][1000 genomes]
rs17005074	0.89[EUR][1000 genomes]
rs17005075	0.89[EUR][1000 genomes]
rs17005076	0.89[EUR][1000 genomes]
rs17005077	0.89[EUR][1000 genomes]
rs17005078	0.89[EUR][1000 genomes]
rs17005080	0.88[EUR][1000 genomes]
rs17005086	0.99[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2028643	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3733551	0.89[EUR][1000 genomes]
rs41414947	0.89[EUR][1000 genomes]
rs56405539	0.84[EUR][1000 genomes]
rs57715585	0.95[ASN][1000 genomes]
rs6849299	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs733241	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs751296	0.89[EUR][1000 genomes]
rs751297	0.89[EUR][1000 genomes]
rs7656323	0.84[AMR][1000 genomes]
rs7656582	0.98[ASN][1000 genomes]
rs9884233	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1822437	chr4:82025743-82118996	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:82100000-82117200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:82105600-82117200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:82114600-82117000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:82114800-82118400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:82115200-82117200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:82116000-82117400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:82116000-82117600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:82116000-82121000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:82116200-82120200	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:82116200-82121200	Weak transcription	NHLF	lung
11	chr4:82116600-82117000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:82116600-82120000	Genic enhancers	Fetal Intestine Small	intestine
13	chr4:82116800-82117600	Genic enhancers	NHDF-Ad	bronchial
14	chr4:82116800-82119200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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