Variant report

Variant	rs144362502
Chromosome Location	chr15:44582972-44582973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:44581353..44583022-chr15:44719175..44720728,2	K562	blood:

Variant related genes	Relation type
ENSG00000259595	Chromatin interaction
ENSG00000137770	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431387	chr15:43929378-44862930	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	158 gene(s)	inside rSNPs	diseases
2	nsv931051	chr15:43988761-44833518	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
3	nsv1052511	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542371	chr15:44266441-44719023	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3410956	chr15:44425145-44823647	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv2754388	chr15:44479709-44592847	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv1044686	chr15:44489534-44697482	Strong transcription Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv1043822	chr15:44491220-44686957	Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv1035386	chr15:44498905-44677174	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv904177	chr15:44582886-44821843	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:44579400-44583000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:44579400-44583000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:44579400-44583000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
4	chr15:44579400-44583600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:44579400-44584000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:44579600-44583400	Active TSS	K562	blood
7	chr15:44579600-44585000	Active TSS	GM12878-XiMat	blood
8	chr15:44579800-44583000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr15:44579800-44583000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:44579800-44583600	Active TSS	NHLF	lung
11	chr15:44581200-44583000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr15:44581200-44583000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:44581600-44583000	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr15:44581600-44583000	Flanking Active TSS	Dnd41	blood
15	chr15:44581600-44583000	Flanking Active TSS	Hela-S3	cervix
16	chr15:44581800-44583000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr15:44581800-44583000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:44581800-44583200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:44581800-44583600	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr15:44582000-44583000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:44582000-44583000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:44582000-44583000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr15:44582000-44583000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr15:44582000-44583000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr15:44582000-44583000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr15:44582000-44583000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:44582000-44583000	Active TSS	Fetal Muscle Leg	muscle
28	chr15:44582000-44583000	Weak transcription	Pancreas	Pancrea
29	chr15:44582000-44583000	Flanking Active TSS	Osteobl	bone
30	chr15:44582000-44583200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr15:44582000-44583600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr15:44582000-44583600	Enhancers	Primary B cells from peripheral blood	blood
33	chr15:44582000-44583800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr15:44582000-44584000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr15:44582000-44584000	Enhancers	Liver	Liver
36	chr15:44582000-44584000	Enhancers	Colon Smooth Muscle	Colon
37	chr15:44582000-44584800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:44582000-44588800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr15:44582000-44589000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:44582000-44591200	Weak transcription	Spleen	Spleen
41	chr15:44582000-44592000	Weak transcription	Esophagus	oesophagus
42	chr15:44582000-44602000	Weak transcription	Gastric	stomach
43	chr15:44582000-44639400	Weak transcription	Lung	lung
44	chr15:44582200-44583000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
45	chr15:44582200-44583000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr15:44582200-44583000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:44582200-44583000	Enhancers	Adipose Nuclei	Adipose
48	chr15:44582200-44583000	Enhancers	Fetal Intestine Large	intestine
49	chr15:44582200-44583000	Enhancers	Fetal Lung	lung
50	chr15:44582200-44583000	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links